PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00876
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ARF
Protein Properties Length: 619aa    MW: 68915.6 Da    PI: 7.2246
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00876genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.22e-15111186171
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                 f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW+ F + 
  AA32G00876 111 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFMNT 186
                 89****************************987555555..8*********************************986 PP

2Auxin_resp1126e-37198280283
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                   +a+++++FevvY+Prast+eF+vk+++v++a+++++s GmRfkmafetedss++++ +Gtv++v+ +dp+rWp+S+Wr+L+
  AA32G00876 198 LARAASGQAFEVVYYPRASTPEFCVKASDVRSAMRMRWSGGMRFKMAFETEDSSRISWfMGTVSSVQFADPIRWPHSPWRLLQ 280
                 567899***************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-25103186IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-23107190IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-12110183No hitNo description
PfamPF023624.1E-13111187IPR003340B3 DNA binding domain
SMARTSM010190.0071111203IPR003340B3 DNA binding domain
PfamPF065077.1E-32199280IPR010525Auxin response factor
PROSITE profilePS5174517.816496579IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MEVEKSLDPQ LWHACAGSMV QIPGLNSTVY YFPQGHIEHA HAPSDFHAPR VPPLLLCRVV  60
AVKFLADLES DEVYTKLTLL PIAGNDLDLE NDAVSGHATS DGNTNEKPAS FAKTLTQSDA  120
NNGGGFSVPR YCAETIFPRL DYTAEPPVQT VIAKDIHGET WKFRHIYRGT PRRHLLTTGW  180
STFMNTGRAK VEAVAEALAR AASGQAFEVV YYPRASTPEF CVKASDVRSA MRMRWSGGMR  240
FKMAFETEDS SRISWFMGTV SSVQFADPIR WPHSPWRLLQ VAWDEPDLLQ NVKRVSPWLV  300
EVVSNIPTIH LSPFSPRKKI RIPQPFDFPF DGTKFPIFSP TFTGINNNND SMCYLDNINN  360
NNNKNNAPAG IQGARQAQQL FGSPSLLSDL TINNSYSSNK LQSPSPGLFF SGFKHFTQPH  420
PKLQFTETEN NNISCSLTMG NSSPVQDKNS VPVKSSSFLL FGQPILTEQQ VLNRKRLMEE  480
TEEKKWNYNN LQGLETGHCK VFMESEDVGR TLDLTVIGSY QELNRKLTEM FSIEERTDLL  540
PHVVYRDGDG NTKRIGDELY SDFVRTTKRL TIKMNKGSGG GGSNGGGGSN GDNVRKTWIT  600
GLRNGENGID ATGPLSIFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-67730151388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521760.10.0PREDICTED: LOW QUALITY PROTEIN: auxin response factor 10
SwissprotQ9SKN50.0ARFJ_ARATH; Auxin response factor 10
TrEMBLA0A078FS550.0A0A078FS55_BRANA; Auxin response factor
STRINGPOPTR_0010s23000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10